Please use this identifier to cite or link to this item: http://hdl.handle.net/2445/110266
Title: Genomic expression differences between cutaneous cells from red hair color individuals and black hair color individuals based on bioinformatic analysis.
Author: Puig Butillé, Joan Anton
Gimenez-Xavier, Pol
Visconti, Alessia
Nsengimana, Jérémie
Garcia-García, Francisco
Tell-Marti, Gemma
Escamez, Maria José
Newton-Bishop, Julia
Bataille, Veronique
Río, Marcela del
Dopazo, Joaquín
Falchi, Mario
Puig i Sardà, Susana
Keywords: Autofàgia
Melanoma
Fisiologia cel·lular
Genètica humana
Bioinformàtica
Autophagy
Melanoma
Cell physiology
Human genetics
Bioinformatics
Issue Date: 24-Dec-2016
Publisher: Impact Journals
Abstract: The MC1R gene plays a crucial role in pigmentation synthesis. Loss-of-function MC1R variants, which impair protein function, are associated with red hair color (RHC) phenotype and increased skin cancer risk. Cultured cutaneous cells bearing loss-of-function MC1R variants show a distinct gene expression profile compared to wild-type MC1R cultured cutaneous cells. We analysed the gene signature associated with RHC co-cultured melanocytes and keratinocytes by Protein-Protein interaction (PPI) network analysis to identify genes related with non-functional MC1R variants. From two detected networks, we selected 23 nodes as hub genes based on topological parameters. Differential expression of hub genes was then evaluated in healthy skin biopsies from RHC and black hair color (BHC) individuals. We also compared gene expression in melanoma tumors from individuals with RHC versus BHC. Gene expression in normal skin from RHC cutaneous cells showed dysregulation in 8 out of 23 hub genes (CLN3, ATG10, WIPI2, SNX2, GABARAPL2, YWHA, PCNA and GBAS). Hub genes did not differ between melanoma tumors in RHC versus BHC individuals. The study suggests that healthy skin cells from RHC individuals present a constitutive genomic deregulation associated with the red hair phenotype and identify novel genes involved in melanocyte biology.
Note: Reproducció del document publicat a: https://doi.org/10.18632/oncotarget.14140
It is part of: Oncotarget, 2016, vol. 8, num. 7, p. 11589-11599
Related resource: https://doi.org/10.18632/oncotarget.14140
URI: http://hdl.handle.net/2445/110266
ISSN: 1949-2553
Appears in Collections:Articles publicats en revistes (Medicina)
Articles publicats en revistes (IDIBAPS: Institut d'investigacions Biomèdiques August Pi i Sunyer)

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