Please use this identifier to cite or link to this item: http://hdl.handle.net/2445/176253
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dc.contributor.authorDíaz Gay, Marcos-
dc.contributor.authorFranch Expósito, Sebastià-
dc.contributor.authorArnau Collell, Coral-
dc.contributor.authorPark, Solip-
dc.contributor.authorSupek, Fran-
dc.contributor.authorMuñoz, Jenifer-
dc.contributor.authorBonjoch Gassol, Laia-
dc.contributor.authorGratacós Mulleras, Anna-
dc.contributor.authorSánchez Rojas, Paula A.-
dc.contributor.authorEsteban Jurado, Clara-
dc.contributor.authorOcaña, Teresa-
dc.contributor.authorCuatrecasas Freixas, Miriam-
dc.contributor.authorVila Casadesús, Maria-
dc.contributor.authorLozano, Juan José-
dc.contributor.authorParra, Genís-
dc.contributor.authorLaurie, Steve-
dc.contributor.authorBeltrán, Sergi-
dc.contributor.authorEPICOLON Consortium-
dc.contributor.authorCastells Garangou, Antoni-
dc.contributor.authorBujanda, Luis-
dc.contributor.authorCubiella, Joaquín-
dc.contributor.authorBalaguer Prunés, Francesc-
dc.contributor.authorCastellví Bel, Sergi-
dc.date.accessioned2021-04-13T09:18:35Z-
dc.date.available2021-04-13T09:18:35Z-
dc.date.issued2019-03-13-
dc.identifier.issn2072-6694-
dc.identifier.urihttp://hdl.handle.net/2445/176253-
dc.description.abstractColorectal cancer (CRC) shows aggregation in some families but no alterations in the known hereditary CRC genes. We aimed to identify new candidate genes which are potentially involved in germline predisposition to familial CRC. An integrated analysis of germline and tumor whole-exome sequencing data was performed in 18 unrelated CRC families. Deleterious single nucleotide variants (SNV), short insertions and deletions (indels), copy number variants (CNVs) and loss of heterozygosity (LOH) were assessed as candidates for first germline or second somatic hits. Candidate tumor suppressor genes were selected when alterations were detected in both germline and somatic DNA, fulfilling Knudson's two-hit hypothesis. Somatic mutational profiling and signature analysis were also performed. A series of germline-somatic variant pairs were detected. In all cases, the first hit was presented as a rare SNV/indel, whereas the second hit was either a different SNV (3 genes) or LOH affecting the same gene (141 genes). BRCA2, BLM, ERCC2, RECQL, REV3L and RIF1 were among the most promising candidate genes for germline CRC predisposition. The identification of new candidate genes involved in familial CRC could be achieved by our integrated analysis. Further functional studies and replication in additional cohorts are required to confirm the selected candidates.-
dc.format.extent16 p.-
dc.format.mimetypeapplication/pdf-
dc.language.isoeng-
dc.publisherMDPI-
dc.relation.isformatofReproducció del document publicat a: https://doi.org/10.3390/cancers11030362-
dc.relation.ispartofCancers, 2019, vol. 11, num. 3, p. 362-
dc.relation.urihttps://doi.org/10.3390/cancers11030362-
dc.rightscc-by (c) Díaz Gay, Marcos et al., 2019-
dc.rights.urihttp://creativecommons.org/licenses/by/3.0/es-
dc.subject.classificationCàncer colorectal-
dc.subject.classificationNucleòtids-
dc.subject.classificationADN-
dc.subject.otherColorectal cancer-
dc.subject.otherNucleotides-
dc.subject.otherDNA-
dc.titleIntegrated Analysis of Germline and Tumor DNA Identifies New Candidate Genes Involved in Familial Colorectal Cancer-
dc.typeinfo:eu-repo/semantics/article-
dc.typeinfo:eu-repo/semantics/publishedVersion-
dc.identifier.idgrec695488-
dc.date.updated2021-04-13T09:18:35Z-
dc.rights.accessRightsinfo:eu-repo/semantics/openAccess-
Appears in Collections:Articles publicats en revistes (IDIBAPS: Institut d'investigacions Biomèdiques August Pi i Sunyer)
Articles publicats en revistes (Fonaments Clínics)
Articles publicats en revistes (Institut de Recerca Biomèdica (IRB Barcelona))

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