core
Class Tree

java.lang.Object
  core.Identifier
      core.Tree

public class Tree
extends Identifier

Identification identax.core extension using dichotomical trees It generates the tree with the minimum number of tests requiered

Version:

1.0

Author:

Oscar Flores

Field Summary

TreeNode

root Root node of the tree

Fields inherited from class core.Identifier

cnf, con, mat, sum

Constructor Summary

Tree(Context con, Matrix mat, Configuration cnf)
Creates a new Tree Identifier with no done tests

Method Summary

private TreeNode	recursiveTree(Context con) Recursive method to populate tree
void	run() Populates the tree nodes with test and taxa, updating every node.

Methods inherited from class core.Identifier

getBestTaxaIndex, getBestTestIndex, getBestTestIndex, getBestTestIndex, getBestTestIndex, getTaxaIndex, getTestIndex, getTestIndex, getTestIndex, getTestIndex, isSeparator, normTaxaProb

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

root

public TreeNode root

Root node of the tree

Constructor Detail

Tree

public Tree(Context con,
            Matrix mat,
            Configuration cnf)

Creates a new Tree Identifier with no done tests

Parameters:

con - Context of the execution

mat - Reference matrix

Method Detail

run

public void run()
         throws java.lang.Exception

Populates the tree nodes with test and taxa, updating every node. The final result is a tree with the best test secuence founded

Throws:

java.lang.Exception - if there is any error during the runtime

recursiveTree

private TreeNode recursiveTree(Context con)
                        throws java.lang.Exception

Recursive method to populate tree

Parameters:

con - node Context

Returns:

The current node and all his sons populated

Throws:

java.lang.Exception - if there is any error during the runtime