Uses of Class
data.TreeNode

Packages that use TreeNode

core
data
data.exporters

Uses of TreeNode in core

Fields in core declared as TreeNode

TreeNode

Tree.root Root node of the tree

Methods in core that return TreeNode

private TreeNode

Tree.recursiveTree(Context con) Recursive method to populate tree

Uses of TreeNode in data

Fields in data declared as TreeNode

TreeNode	TreeNode.negBrench Pointer to the negative result brench
TreeNode	TreeNode.posBrench Pointer to the positive result brench

Uses of TreeNode in data.exporters

Methods in data.exporters with parameters of type TreeNode

private static java.lang.String	ExporterDOT.getNodeId(TreeNode tn) Returns the Strign used to identify a node in tree.
private static java.lang.String	ExporterDOT.getNodeLine(TreeNode tn, Matrix m, boolean isTaxa) Returns the String of a node line of the tree
private static void	ExporterDOT.writeDOT(TreeNode t, Matrix mat, java.io.OutputStreamWriter out) Writes recursively all the tree nodes
private static void	ExporterTreeML.writeTreeML(TreeNode t, int level, Matrix mat, java.io.OutputStreamWriter out) Writes recursively all the tree nodes
private static void	ExporterXML.writeXML(TreeNode t, int level, Matrix mat, java.io.OutputStreamWriter out) Writes recursively all the tree nodes