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Spatiotemporal T-cell tracking for personalized T-cell receptor T-cell therapy designs in childhood cancer

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Background: Immune checkpoint inhibition (ICI) has revolutionized oncology, offering extended survival and long-term remission in previously incurable cancers. While highly effective in tumors with high mutational burden, lowly mutated cancers, including pediatric malignancies, present low response rate and limited predictive biomarkers. Patients and methods: We present a framework for the identification and validation of tumor-reactive T cells as a biomarker to quantify ICI efficacy and as candidates for a personalized T-cell receptor T-cell (TCR-T) therapy. Therefore, we profiled a pediatric malignant rhabdoid tumor patient with complete remission after ICI therapy using deep single-cell T-cell receptor (TCR) repertoire sequencing of the tumor microenvironment (TME) and the peripheral blood. Results: Tracking T-cell dynamics longitudinally from the tumor to cells in circulation over a time course of 12 months revealed a systemic response and durable clonal expansion of tumor-resident and ICI-induced TCR clonotypes. We functionally validated tumor reactivity of TCRs identified from the TME and the blood by co-culturing patient-derived tumor cells with TCR-engineered autologous T cells. Here, we observed unexpectedly high frequencies of tumor-reactive TCR clonotypes in the TME and confirmed T-cell dynamics in the blood post-ICI to predict tumor reactivity. Conclusions: These findings strongly support spatiotemporal tracking of T-cell activity in response to ICI to inform therapy efficacy and to serve as a source of tumor-reactive TCRs for personalized TCR-T designs.

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Sentís, I; Melero, JL; Cebria-Xart, A; Grzelak, M; Soto, M; Michel, A; Rovira, Q; Rodriguez-Hernandez, CJ; Caratù, G; Urpi, A; Sauvage, C; Mendizabal- (2025). Spatiotemporal T-cell tracking for personalized T-cell receptor T-cell therapy designs in childhood cancer. ANNALS OF ONCOLOGY, 36(9), 1096-1106. DOI: 10.1016/j.annonc.2025.05.530

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Articles publicats en revistes (Institut de Recerca Biomèdica (IRB Barcelona))

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Spatiotemporal T-cell tracking for personalized T-cell receptor T-cell therapy designs in childhood cancer