Carcereny, AlbertMartínez-Velázquez, AdánBosch, AlbertAllende, AnnaTruchado, PilarCascales, JeniferRomalde, JesúsLois, MartaPolo, DavidSánchez, GloriaPérez-Cataluña, AlbaDíaz-Reolid, AzaharaAntón, AndrésGregor, JosepGarcia-Cehic, DamirQuer, JosepPalau, MargaritaGonzález Ruano, CristinaPintó Solé, Rosa MaríaGuix, Susana2023-02-132023-02-1320210013-936Xhttps://hdl.handle.net/2445/193482Since its first identification in the United Kingdom in late 2020, the highly transmissible B.1.1.7 variant of SARS-CoV-2 has become dominant in several countries raising great concern. We developed a duplex real-time RT-qPCR assay to detect, discriminate, and quantitate SARS-CoV-2 variants containing one of its mutation signatures, the ΔHV69/70 deletion, and used it to trace the community circulation of the B.1.1.7 variant in Spain through the Spanish National SARS-CoV-2 Wastewater Surveillance System (VATar COVID-19). The B.1.1.7 variant was detected earlier than clinical epidemiological reporting by the local authorities, first in the southern city of Málaga (Andalucía) in week 20_52 (year_week), and multiple introductions during Christmas holidays were inferred in different parts of the country. Wastewater-based B.1.1.7 tracking showed a good correlation with clinical data and provided information at the local level. Data from wastewater treatment plants, which reached B.1.1.7 prevalences higher than 90% for ≥2 consecutive weeks showed that 8.1 ± 2.0 weeks were required for B.1.1.7 to become dominant. The study highlights the applicability of RT-qPCR-based strategies to track specific mutations of variants of concern as soon as they are identified by clinical sequencing and their integration into existing wastewater surveillance programs, as a cost-effective approach to complement clinical testing during the COVID-19 pandemic.37 p.application/pdfeng(c) American Chemical Society , 2021SARS-CoV-2COVID-19EpidemiologiaSARS-CoV-2COVID-19Epidemiologyinfo:eu-repo/semantics/article7190302023-02-13info:eu-repo/semantics/openAccess