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Title: Comparative pangenome analysis of capsulated Haemophilus influenzae serotype f highlights their high genomic stability
Author: Gonzalez Diaz, Aida
Carrera Salinas, Anna
Pinto, Miguel
Cubero, Meritxell
Ende, Arie van der
Langereis, Jeroen D.
Domínguez, M. Ángeles
Ardanuy, Carmen
Bajanca Lavado, Paula
Marti, Sara
Keywords: Bacils
Bacillus (Bacteria)
Issue Date: 24-Feb-2022
Publisher: Springer Science and Business Media LLC
Abstract: Haemophilus influenzae is an opportunistic pathogen adapted to the human respiratory tract. Non-typeable H. influenzae are highly heterogeneous, but few studies have analysed the genomic variability of capsulated strains. This study aims to examine the genetic diversity of 37 serotype f isolates from the Netherlands, Portugal, and Spain, and to compare all capsulated genomes available on public databases. Serotype f isolates belonged to CC124 and shared few single nucleotide polymorphisms (SNPs) (n = 10,999), but a high core genome (> 80%). Three main clades were identified by the presence of 75, 60 and 41 exclusive genes for each clade, respectively. Multi-locus sequence type analysis of all capsulated genomes revealed a reduced number of clonal complexes associated with each serotype. Pangenome analysis showed a large pool of genes (n = 6360), many of which were accessory genome (n = 5323). Phylogenetic analysis revealed that serotypes a, b, and f had greater diversity. The total number of SNPs in serotype f was significantly lower than in serotypes a, b, and e (p < 0.0001), indicating low variability within the serotype f clonal complexes. Capsulated H. influenzae are genetically homogeneous, with few lineages in each serotype. Serotype f has high genetic stability regardless of time and country of isolation.
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It is part of: Scientific Reports, 2022, vol 12, num 1
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ISSN: 2045-2322
Appears in Collections:Articles publicats en revistes (Institut d'lnvestigació Biomèdica de Bellvitge (IDIBELL))

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