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http://hdl.handle.net/2445/209870
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DC Field | Value | Language |
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dc.contributor.author | Oller Moreno, Sergio | - |
dc.contributor.author | Mallafre Muro, Celia | - |
dc.contributor.author | Fernández Romero, Luis | - |
dc.contributor.author | Caballero, Eduardo | - |
dc.contributor.author | Blanco, A. | - |
dc.contributor.author | Gumà, J. | - |
dc.contributor.author | Marco Colás, Santiago | - |
dc.contributor.author | Pardo Martínez, Antonio | - |
dc.date.accessioned | 2024-04-12T14:58:18Z | - |
dc.date.available | 2024-04-12T14:58:18Z | - |
dc.date.issued | 2023-10-15 | - |
dc.identifier.issn | 0169-7439 | - |
dc.identifier.uri | http://hdl.handle.net/2445/209870 | - |
dc.description.abstract | Gas-Chromatography coupled to Ion Mobility Spectrometry (GC-IMS) based metabolomics is an emerging technique for obtaining fast, reliable untargeted metabolic fingerprints of biofluids. The generated raw data is highly dimensional and complex, suffers from baseline problems, misalignments, long peak tails and strong non-linearities that must be corrected to extract chemically relevant features from samples. In this work, we present our GCIMS R package, which includes spectra loading, metadata handling, denoising, baseline correction, spectral and chromatographic alignment, peak detection, integration, and peak clustering to produce a peak table ready for multivariate data analysis. We discuss package design decisions, and, for illustration purposes, we show a case study of sex discrimination on the basis of the volatile compounds in urine samples. The GCIMS package provides a user-friendly workflow for non-code developers to process their raw data samples. | - |
dc.format.extent | 7 p. | - |
dc.format.mimetype | application/pdf | - |
dc.language.iso | eng | - |
dc.publisher | Elsevier B.V. | - |
dc.relation.isformatof | Reproducció del document publicat a: https://doi.org/10.1016/j.chemolab.2023.104938 | - |
dc.relation.ispartof | Chemometrics and Intelligent Laboratory Systems, 2023, vol. 241, num.15, p. 1-7 | - |
dc.relation.uri | https://doi.org/10.1016/j.chemolab.2023.104938 | - |
dc.rights | cc-by-nc-nd (c) Oller Moreno, Sergio et al., 2023 | - |
dc.rights.uri | http://creativecommons.org/licenses/by-nc-nd/4.0/ | - |
dc.source | Articles publicats en revistes (Enginyeria Electrònica i Biomèdica) | - |
dc.subject.classification | Cromatografia de gasos | - |
dc.subject.classification | Espectroscòpia de mobilitat d'ions | - |
dc.subject.classification | Compostos orgànics volàtils | - |
dc.subject.other | Gas chromatography | - |
dc.subject.other | Ion mobility spectroscopy | - |
dc.subject.other | Volatile organic compounds | - |
dc.title | GCIMS: An R package for untargeted gas chromatography - Ion mobility spectrometry data processing | - |
dc.type | info:eu-repo/semantics/article | - |
dc.type | info:eu-repo/semantics/publishedVersion | - |
dc.identifier.idgrec | 739133 | - |
dc.date.updated | 2024-04-12T14:58:23Z | - |
dc.rights.accessRights | info:eu-repo/semantics/openAccess | - |
dc.identifier.idimarina | 6604508 | - |
Appears in Collections: | Articles publicats en revistes (Enginyeria Electrònica i Biomèdica) Articles publicats en revistes (Institut de Bioenginyeria de Catalunya (IBEC)) |
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File | Description | Size | Format | |
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827825.pdf | 2.75 MB | Adobe PDF | View/Open |
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