Interplay between the gentlest ascent dynamics method and conjugate directions to locate transition states

dc.contributor.authorBofill i Villà, Josep M.
dc.contributor.authorRibas Ariño, Jordi
dc.contributor.authorValero Montero, Rosendo
dc.contributor.authorAlbareda, Guillermo
dc.contributor.authorMoreira, Ibério de Pinho Ribeiro
dc.contributor.authorQuapp, Wolfgang
dc.date.accessioned2020-03-17T11:03:07Z
dc.date.available2020-08-21T05:10:26Z
dc.date.issued2019-08-21
dc.date.updated2020-03-17T11:03:08Z
dc.description.abstractAn algorithm to locate transition states on a potential energy surface (PES) is proposed and described. The technique is based on the GAD method where the gradient of the PES is projected into a given direction and also perpendicular to it. In the proposed method, named GAD-CD, the projection is not only applied to the gradient but also to the Hessian matrix. Then, the resulting Hessian matrix is block diagonal. The direction is updated according to the GAD method. Furthermore, to ensure stability and to avoid a high computational cost, a trust region technique is incorporated and the Hessian matrix is updated at each iteration. The performance of the algorithm in comparison with the standard ascent dynamics is discussed for a simple two dimensional model PES. Its efficiency for describing the reaction mechanisms involving small and medium size molecular systems is demonstrated for five molecular systems of interest.
dc.format.extent14 p.
dc.format.mimetypeapplication/pdf
dc.identifier.idgrec693313
dc.identifier.issn1549-9618
dc.identifier.urihttps://hdl.handle.net/2445/152811
dc.language.isoeng
dc.publisherAmerican Chemical Society
dc.relation.isformatofVersió postprint del document publicat a: https://doi.org/10.1021/acs.jctc.8b01061
dc.relation.ispartofJournal of Chemical Theory and Computation, 2019, vol. 15, num. 10, p. 5426-5439
dc.relation.projectIDinfo:eu-repo/grantAgreement/EC/H2020/752822/EU//BeBOP
dc.relation.urihttps://doi.org/10.1021/acs.jctc.8b01061
dc.rights(c) American Chemical Society , 2019
dc.rights.accessRightsinfo:eu-repo/semantics/openAccess
dc.sourceArticles publicats en revistes (Química Inorgànica i Orgànica)
dc.subject.classificationDinàmica molecular
dc.subject.classificationAlgorismes computacionals
dc.subject.classificationQuímica física
dc.subject.otherMolecular dynamics
dc.subject.otherComputer algorithms
dc.subject.otherPhysical and theoretical chemistry
dc.titleInterplay between the gentlest ascent dynamics method and conjugate directions to locate transition states
dc.typeinfo:eu-repo/semantics/article
dc.typeinfo:eu-repo/semantics/acceptedVersion

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