Programari (Genètica, Microbiologia i Estadística)

URI permanent per a aquesta col·leccióhttps://hdl.handle.net/2445/53404

 Estadístiques

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    Identax Bacterial Identifier
    (2013-02-22) Flores Guri, Òscar; Belanche-Muñoz, Luis A.; Blanch i Gisbert, Anicet
    Identax bacterial identifier is a free program for the taxonomical identification of bacteria using phenotypical characteristics. It is aimed at the microbiologist community, and also at any field with a need for cheap and fast classification of unknown strains of bacteria. In order to perform the identification process, IDENTAX uses the existing knowledge of various scientific workgroups, wich generously yield matrices containing the prior probabilities of a taxa set of response (in a positive or negative way) to a specific test.
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    DnaSP Version 5. DNA Sequence Polymorphism
    (2010-03-04) Rozas Liras, Julio A.; Librado Sanz, Pablo; Sánchez del Barrio, Juan Carlos; Messeguer Peypoch, Xavier; Rozas, Ricardo
    DnaSP, DNA Sequence Polymorphism, is a software package for the analysis of nucleotide polymorphism from aligned DNA sequence data. DnaSP can estimate several measures of DNA sequence variation within and between populations (in noncoding, synonymous or nonsynonymous sites, or in various sorts of codon positions), as well as linkage disequilibrium, recombination, gene flow and gene conversion parameters. DnaSP can also carry out several tests of neutrality: Hudson, Kreitman and Aguadé (1987), Tajima (1989), McDonald and Kreitman (1991), Fu and Li (1993), and Fu (1997) tests. Additionally, DnaSP can estimate the confidence intervals of some test-statistics by the coalescent. The results of the analyses are displayed on tabular and graphic form.
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    VariScan Software
    (2010-01-19) Vilella Bertran, Albert; Blanco-García, Angel; Hutter, Stephan; Rozas Liras, Julio A.
    VariScan is a software package for the analysis of DNA sequence polymorphisms at the whole genome scale. Among other features, the software: (1) can conduct many population genetic analyses; (2) incorporates a multiresolution wavelet transform-based method that allows capturing relevant information from DNA polymorphism data; and (3) it facilitates the visualization of the results in the most commonly used genome browsers.
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    BadiRate Software
    (2011-11-02) Librado Sanz, Pablo; Vieira, Filipe G.; Rozas Liras, Julio A.
    BadiRate is a software package to estimate, within a phylogenetic context and by likelihood-based methods (or parsimony): (1) the gain, birth, death and innovation family turnover rates (2) most likely number of family members in internal nodes (3) families with turnover rates higher or lower than that estimated for the whole data