Programari (Genètica, Microbiologia i Estadística)
URI permanent per a aquesta col·leccióhttps://hdl.handle.net/2445/53404
Examinar
Enviaments recents
Mostrant 1 - 3 de 3
Altres
BadiRate Software(2011-11-02) Librado Sanz, Pablo; Vieira, Filipe G.; Rozas Liras, Julio A.BadiRate is a software package to estimate, within a phylogenetic context and by likelihood-based methods (or parsimony): (1) the gain, birth, death and innovation family turnover rates (2) most likely number of family members in internal nodes (3) families with turnover rates higher or lower than that estimated for the whole dataAltres
DnaSP Version 5. DNA Sequence Polymorphism(2010-03-04) Rozas Liras, Julio A.; Librado Sanz, Pablo; Sánchez del Barrio, Juan Carlos; Messeguer Peypoch, Xavier; Rozas, RicardoDnaSP, DNA Sequence Polymorphism, is a software package for the analysis of nucleotide polymorphism from aligned DNA sequence data. DnaSP can estimate several measures of DNA sequence variation within and between populations (in noncoding, synonymous or nonsynonymous sites, or in various sorts of codon positions), as well as linkage disequilibrium, recombination, gene flow and gene conversion parameters. DnaSP can also carry out several tests of neutrality: Hudson, Kreitman and Aguadé (1987), Tajima (1989), McDonald and Kreitman (1991), Fu and Li (1993), and Fu (1997) tests. Additionally, DnaSP can estimate the confidence intervals of some test-statistics by the coalescent. The results of the analyses are displayed on tabular and graphic form.Altres
VariScan Software(2010-01-19) Vilella Bertran, Albert; Blanco-García, Angel; Hutter, Stephan; Rozas Liras, Julio A.VariScan is a software package for the analysis of DNA sequence polymorphisms at the whole genome scale. Among other features, the software: (1) can conduct many population genetic analyses; (2) incorporates a multiresolution wavelet transform-based method that allows capturing relevant information from DNA polymorphism data; and (3) it facilitates the visualization of the results in the most commonly used genome browsers.