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Prediction of n-octanol/water partition coefficients and acidity constants (pKa) in the SAMPL7 blind challenge with the IEFPCM-MST model

dc.contributor.authorViayna Gaza, Antonio
dc.contributor.authorPinheiro, Silvana de Souza
dc.contributor.authorCurutchet Barat, Carles E.
dc.contributor.authorLuque Garriga, F. Xavier
dc.contributor.authorZamora Ramírez, William J.
dc.date.accessioned2021-09-02T11:26:23Z
dc.date.issued2021-07-10
dc.date.updated2021-09-02T11:26:24Z
dc.description.abstractWithin the scope of SAMPL7 challenge for predicting physical properties, the Integral Equation Formalism of the Miertus-Scrocco-Tomasi (IEFPCM/MST) continuum solvation model has been used for the blind prediction of n-octanol/water partition coefficients and acidity constants of a set of 22 and 20 sulfonamide-containing compounds, respectively. The log P and pKa were computed using the B3LPYP/6-31G(d) parametrized version of the IEFPCM/MST model. The performance of our method for partition coefficients yielded a root-mean square error of 1.03 (log P units), placing this method among the most accurate theoretical approaches in the comparison with both globally (rank 8th) and physical (rank 2nd) methods. On the other hand, the deviation between predicted and experimental pKa values was 1.32 log units, obtaining the second best-ranked submission. Though this highlights the reliability of the IEFPCM/MST model for predicting the partitioning and the acid dissociation constant of drug-like compounds compound, the results are discussed to identify potential weaknesses and improve the performance of the method.
dc.format.extent9 p.
dc.format.mimetypeapplication/pdf
dc.identifier.idgrec713564
dc.identifier.issn0920-654X
dc.identifier.urihttps://hdl.handle.net/2445/179838
dc.language.isoeng
dc.publisherSpringer Verlag
dc.relation.isformatofVersió postprint del document publicat a: https://doi.org/10.1007/s10822-021-00394-6
dc.relation.ispartofJournal of Computer-Aided Molecular Design, 2021, vol. 35, p. 803-811
dc.relation.urihttps://doi.org/10.1007/s10822-021-00394-6
dc.rights(c) Springer Verlag, 2021
dc.rights.accessRightsinfo:eu-repo/semantics/openAccess
dc.sourceArticles publicats en revistes (Farmàcia, Tecnologia Farmacèutica i Fisicoquímica)
dc.subject.classificationSolvatació
dc.subject.classificationBioquímica
dc.subject.classificationFarmacologia
dc.subject.otherSolvation
dc.subject.otherBiochemistry
dc.subject.otherPharmacology
dc.titlePrediction of n-octanol/water partition coefficients and acidity constants (pKa) in the SAMPL7 blind challenge with the IEFPCM-MST model
dc.typeinfo:eu-repo/semantics/article
dc.typeinfo:eu-repo/semantics/acceptedVersion

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